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Diagnostic barcodes generated for the group Prochlorococcus (average length - 10 kbp.)

Graphical COG plot

 

*Genes with the same numbers are orthologs
GenomeLocus tagAnnotationLocation in barcodeCore/Accessory gene
NC_009091 Prochlorococcus marinus str. MIT 9301, complete genome.
1P9301_00491ndk,nucleoside diphosphate kinase (dir) [1-459]Core
2P9301_00191hypothetical protein (rev) [21293..21643][510-860]Core
3P9301_13031hypothetical protein (dir) [1093066..1094769][911-2614]Core
4P9301_17221rpmE,50S ribosomal protein L31 (rev) [1457167..1457427][2665-2925]Core
5P9301_14701rpsP,30S ribosomal protein S16 (rev) [1237502..1237867][2976-3341]Core
6P9301_012216-pyruvoyl tetrahydrobiopterin synthase [3392-4318]Core
7P9301_16181hypothetical protein (dir) [1353670..1354128][4369-4827]Core
8P9301_05221hemC,porphobilinogen deaminase (rev) [453661..454611][4878-5828]Core
9P9301_165117-cyano-7-deazaguanine reductase (rev) [5879-6289]Core
10P9301_06701metA,homoserine O-succinyltransferase (dir) [6340-7290]Core
11P9301_09751coaD,phosphopantetheine adenylyltransferase [7341-7814]Core
12P9301_02941tgt,queuine tRNA-ribosyltransferase (dir) [7865-8983]Core
uniqueP9301_16161hypothetical protein (rev) [1352109..1352603][9096-9641]Accessory
uniqueP9301_14061hypothetical protein (rev) [1174003..1174221][10249-10518]Accessory
uniqueP9301_14221hypothetical protein (rev) [1188279..1189061][11395-12228]Accessory
uniqueP9301_00561hypothetical protein (rev) [62819..63253][13938-14423]Accessory
NC_007577 Prochlorococcus marinus str. MIT 9312, complete genome.
1PMT9312_0047ndk details recorded,nucleoside diphosphate [1-459]Core
2PMT9312_0020hypothetical protein (rev) [21314..21664][510-860]Core
3PMT9312_1224hypothetical protein (dir) [1141418..1143121][911-2614]Core
4PMT9312_1623rpmE details recorded,50S ribosomal protein [2665-2925]Core
5PMT9312_1381rpsP details recorded,30S ribosomal protein [2976-3341]Core
6PMT9312_01106-pyruvoyl tetrahydropterin synthase (rev) [3392-4318]Core
7PMT9312_1521hypothetical protein (dir) [1419857..1420315][4369-4827]Core
8PMT9312_0496hemC details recorded,porphobilinogen deaminase [4878-5828]Core
uniquePMT9312_1185subtilisin-like serine protease-like (rev) [5937-8663]Accessory
uniquePMT9312_1198hypothetical protein (rev) [1118446..1120614][11448-13667]Accessory
NC_008819 Prochlorococcus marinus str. NATL1A, complete genome.
1NATL1_00601ndk,nucleoside diphosphate kinase (dir) [1-456]Core
2NATL1_00191hypothetical protein (rev) [21828..22175][507-854]Core
3NATL1_12841hypothetical protein (dir) [1093809..1095503][905-2599]Core
4NATL1_19761rpmE,50S ribosomal protein L31 (rev) [1632220..1632480][2650-2910]Core
5NATL1_17051rpsP,30S ribosomal protein S16 (rev) [1389011..1389343][2961-3293]Core
6NATL1_017816-pyruvoyl tetrahydrobiopterin synthase [3344-4270]Core
7NATL1_18281hypothetical protein (dir) [1491685..1492158][4321-4794]Core
8NATL1_05521hemC,porphobilinogen deaminase (rev) [499840..500787][4845-5792]Core
9NATL1_186017-cyano-7-deazaguanine reductase (rev) [5843-6229]Core
10NATL1_07081metA,homoserine O-succinyltransferase (dir) [6280-7173]Core
uniqueNATL1_21031glycosyltransferase (rev) [1747478..1748701][7284-8558]Accessory
uniqueNATL1_17741truB,tRNA pseudouridine 55 synthase (dir) [9893-10888]Accessory
uniqueNATL1_16261hypothetical protein (dir) [1331288..1331815][13218-13796]Accessory
uniqueNATL1_14411hypothetical protein (dir) [1161594..1161941][16704-17102]Accessory
uniqueNATL1_00681hypothetical protein (rev) [74344..74616][20408-20731]Accessory
NC_005071 Prochlorococcus marinus str. MIT 9313 chromosome, complete genome.
1PMT2148ndk details recorded,nucleoside diphosphate [1-459]Core
2PMT0025hypothetical protein (rev) [27990..28331][510-851]Core
3PMT1392hypothetical protein (dir) [1477097..1478800][902-2605]Core
4PMT1760rpmE details recorded,50S ribosomal protein [2656-2937]Core
5PMT0350rpsP details recorded,30S ribosomal protein [2988-3356]Core
6PMT01646-pyruvoyl-tetrahydropterin synthase (dir) [3407-4327]Core
7PMT1439hypothetical protein (dir) [1526995..1527471][4378-4854]Core
8PMT1273hemC details recorded,porphobilinogen [4905-5858]Core
uniquePMT0308hydantoinase/oxoprolinase:hydantoinas B/oxoprolinase [5967-9692]Accessory
NC_009840 Prochlorococcus marinus str. MIT 9215 chromosome, complete genome.
1P9215_00561ndk,nucleoside diphosphate kinase (dir) [1-459]Core
2P9215_00191hypothetical protein (rev) [21198..21548][510-860]Core
3P9215_13301hypothetical protein (dir) [1132897..1134600][911-2614]Core
4P9215_18021rpmE,50S ribosomal protein L31 (rev) [1554028..1554288][2665-2925]Core
5P9215_15131rpsP,30S ribosomal protein S16 (rev) [1305764..1306129][2976-3341]Core
6P9215_012316-pyruvoyl tetrahydropterin synthase (rev) [3392-4318]Core
7P9215_16951hypothetical protein (dir) [1447237..1447701][4369-4833]Core
8P9215_05771hemC,porphobilinogen deaminase (rev) [505124..506080][4884-5840]Core
uniqueP9215_09401carA,carbamoyl phosphate synthase small [5949-7139]Accessory
uniqueP9215_17901wcaA,glycosyl transferase family protein [8388-9401]Accessory
uniqueP9215_04241hypothetical protein (rev) [363372..364595][11663-12937]Accessory
uniqueP9215_14181mitomycin antibiotics/polyketide fumonisi [16473-17360]Accessory
uniqueP9215_14761pfs,nucleoside phosphorylase (rev) [1271649..1272401][21783-22586]Accessory
NC_008816 Prochlorococcus marinus str. AS9601, complete genome.
1A9601_00471ndk,nucleoside diphosphate kinase (dir) [1-459]Core
2A9601_00191hypothetical protein (rev) [21201..21551][510-860]Core
3A9601_12961hypothetical protein (dir) [1082001..1083704][911-2614]Core
4A9601_17381rpmE,50S ribosomal protein L31 (rev) [1483512..1483772][2665-2925]Core
5A9601_14841rpsP,30S ribosomal protein S16 (rev) [1264380..1264745][2976-3341]Core
6A9601_012316-pyruvoyl tetrahydrobiopterin synthase [3392-4318]Core
7A9601_16301hypothetical protein (dir) [1377907..1378365][4369-4827]Core
8A9601_05521hemC,porphobilinogen deaminase (rev) [479244..480194][4878-5828]Core
9A9601_166317-cyano-7-deazaguanine reductase (rev) [5879-6289]Core
10A9601_06991metA,homoserine O-succinyltransferase (dir) [6340-7230]Core
11A9601_09771coaD,phosphopantetheine adenylyltransferase [7281-7754]Core
12A9601_02931tgt,queuine tRNA-ribosyltransferase (dir) [7805-8923]Core
13A9601_06371petE,plastocyanin (rev) [556474..556824][8974-9324]Core
14A9601_01341hypothetical protein (dir) [127577..127975][9375-9773]Core
uniqueA9601_00541hypothetical protein (dir) [60951..61403][9888-10391]Accessory
uniqueA9601_12871hypothetical protein (rev) [1076688..1076918][10959-11240]Accessory
uniqueA9601_07781hypothetical protein (dir) [676400..676555][12089-12295]Accessory
uniqueA9601_00581hypothetical protein (dir) [63077..63229][13350-13553]Accessory
NC_008820 Prochlorococcus marinus str. MIT 9303 chromosome, complete genome.
1P9303_28301ndk,nucleoside diphosphate kinase (rev) [1-459]Core
2P9303_00241hypothetical protein (rev) [28030..28371][510-851]Core
3P9303_05771hypothetical protein (rev) [553871..555574][902-2605]Core
4P9303_23311rpmE,50S ribosomal protein L31 (dir) [2049465..2049746][2656-2937]Core
5P9303_19551rpsP,30S ribosomal protein S16 (rev) [1719597..1719965][2988-3356]Core
6P9303_020616-pyruvoyl tetrahydrobiopterin synthase [3407-4327]Core
7P9303_05161hypothetical protein (rev) [505361..505837][4378-4854]Core
8P9303_07271hemC,porphobilinogen deaminase (rev) [672155..673108][4905-5858]Core
9P9303_047017-cyano-7-deazaguanine reductase (dir) [5909-6316]Core
10P9303_13181metA,homoserine O-succinyltransferase [6367-7260]Core
11P9303_14961coaD,phosphopantetheine adenylyltransferase [7311-7784]Core
12P9303_24901tgt,queuine tRNA-ribosyltransferase (dir) [7835-8953]Core
13P9303_18341petE,plastocyanin (rev) [1593096..1593455][9004-9363]Core
uniqueP9303_24121hypothetical protein (rev) [2123199..2123369][9477-9698]Accessory
uniqueP9303_18081hypothetical protein (rev) [1575192..1575350][9983-10192]Accessory
uniqueP9303_07061hypothetical protein (rev) [658080..658223][10686-10880]Accessory
uniqueP9303_21981hypothetical protein (dir) [1956263..1956466][11568-11822]Accessory
NC_005072 Prochlorococcus marinus subsp. pastoris str. CCMP1986 chromosome, complete genome.
1PMM0046ndk details recorded,nucleoside diphosphate [1-459]Core
2PMM0020hypothetical protein (rev) [21261..21611][510-860]Core
3PMM1132hypothetical protein (dir) [1082269..1083972][911-2614]Core
4PMM1530rpmE details recorded,50S ribosomal protein [2665-2925]Core
5PMM1285rpsP details recorded,30S ribosomal protein [2976-3320]Core
6PMM01066-pyruvoyl tetrahydrobiopterin synthase [3371-4297]Core
7PMM1428hypothetical protein (dir) [1367679..1368140][4348-4809]Core
8PMM0495hemC details recorded,porphobilinogen deaminase [4860-5810]Core
uniquePMM1714hypothetical protein (dir) [1654279..1656135][5919-7826]Accessory
uniquePMM0721hypothetical protein (dir) [685013..685351][9792-10181]Accessory
uniquePMM1426hypothetical protein (dir) [1366747..1367064][12536-12904]Accessory
uniquePMM1300murA details recorded,UDP-N-acetylglucosamin [15627-17051]Accessory
uniquePMM0727Serine/threonine specific protein phosphatase [21198-21893]Accessory
NC_007335 Prochlorococcus marinus str. NATL2A chromosome, complete genome.
1PMN2A_1379ndk,nucleoside diphosphate kinase (dir) [1-456]Core
2PMN2A_1347hypothetical protein (rev) [21830..22177][507-854]Core
3PMN2A_0538hypothetical protein (dir) [1041899..1043593][905-2599]Core
4PMN2A_1101rpmE details recorded,50S ribosomal protein [2650-2910]Core
5PMN2A_0852rpsP details recorded,30S ribosomal protein [2961-3293]Core
6PMN2A_14756-pyruvoyl tetrahydrobiopterin synthase [3344-4270]Core
7PMN2A_0960hypothetical protein (dir) [1455091..1455564][4321-4794]Core
8PMN2A_1828hemC,porphobilinogen deaminase (rev) [487473..488420][4845-5792]Core
9PMN2A_09917-cyano-7-deazaguanine reductase (rev) [5843-6265]Core
10PMN2A_0084homoserine O-succinyltransferase (dir) [6316-7209]Core
11PMN2A_0326coaD details recorded,phosphopantetheine [7260-7736]Core
uniquePMN2A_0918tRNA pseudouridine synthase B (dir) [1420962..1421906][7848-8843]Accessory
uniquePMN2A_0779hypothetical protein (dir) [1286907..1287527][9900-10571]Accessory
uniquePMN2A_1095hypothetical protein (rev) [1595984..1596334][12299-12700]Accessory
uniquePMN2A_0618hypothetical protein (dir) [1106035..1106382][14829-15227]Accessory
uniquePMN2A_1472hypothetical protein (rev) [149850..150116][17754-18071]Accessory
NC_009976 Prochlorococcus marinus str. MIT 9211, complete genome.
1P9211_00531ndk,nucleoside diphosphate kinase (dir) [1-456]Core
2P9211_00201hypothetical protein (rev) [21919..22266][507-854]Core
3P9211_06141hypothetical protein (rev) [560987..562690][905-2608]Core
4P9211_16501rpmE,50S ribosomal protein L31 (rev) [1488928..1489212][2659-2943]Core
5P9211_13321rpsP,30S ribosomal protein S16 (rev) [1198697..1199074][2994-3371]Core
6P9211_012216-pyruvoyl tetrahydrobiopterin synthase [3422-4312]Core
7P9211_15461hypothetical protein (dir) [1380807..1381277][4363-4833]Core
8P9211_04951hemC,porphobilinogen deaminase (rev) [463714..464664][4884-5834]Core
uniqueP9211_13331ffh,signal recognition particle protein [5943-7451]Accessory
uniqueP9211_07771hypothetical protein (rev) [683512..684339][9018-9896]Accessory
uniqueP9211_13011hypothetical protein (rev) [1174947..1175738][12341-13183]Accessory
uniqueP9211_128812,4-dihydroxyhept-2-ene-1,7-dioic acid [16470-17279]Accessory
uniqueP9211_08261hypothetical protein (rev) [727896..728411][21375-21941]Accessory
NC_005042 Prochlorococcus marinus subsp. marinus str. CCMP1375 chromosome, complete genome.
1Pro0050ndk,nucleoside diphosphate kinase (dir) [1-513]Core
2Pro0020hypothetical protein (rev) [21747..22094][564-911]Core
3Pro1521hypothetical protein (dir) [1390206..1391906][962-2662]Core
4Pro1684rpmE,50S ribosomal protein L31 (rev) [1549450..1549734][2713-2997]Core
5Pro1359rpsP,30S ribosomal protein S16 (rev) [1259377..1259772][3048-3443]Core
6Pro01276-pyruvoyl tetrahydrobiopterin synthase [3494-4402]Core
7Pro1581hypothetical protein (dir) [1438918..1439391][4453-4926]Core
8Pro0494hemC,porphobilinogen deaminase (rev) [470762..471709][4977-5924]Core
9Pro1614GTP cyclohydrolase I (rev) [1469169..1469576][5975-6382]Core
10Pro0801metA,homoserine O-succinyltransferase (dir) [6433-7326]Core
uniquePro1815tig,trigger factor (dir) [1671820..1673223][7437-8891]Accessory
uniquePro1545Zn-dependent protease (dir) [1412082..1413227][10406-11602]Accessory
uniquePro0610hypothetical protein (dir) [571124..571642][14313-14882]Accessory
uniquePro0691hypothetical protein (rev) [634861..635037][18162-18389]Accessory
NC_008817 Prochlorococcus marinus str. MIT 9515, complete genome.
1P9515_00531ndk,nucleoside diphosphate kinase (dir) [1-459]Core
2P9515_00191hypothetical protein (rev) [21264..21614][510-860]Core
3P9515_12881hypothetical protein (dir) [1131565..1133268][911-2614]Core
4P9515_17121rpmE,50S ribosomal protein L31 (rev) [1514146..1514406][2665-2925]Core
5P9515_14461rpsP,30S ribosomal protein S16 (rev) [1280058..1280402][2976-3320]Core
6P9515_011916-pyruvoyl tetrahydrobiopterin synthase [3371-4297]Core
7P9515_16061hypothetical protein (dir) [1405106..1405573][4348-4815]Core
8P9515_05591hemC,porphobilinogen deaminase (rev) [498406..499356][4866-5816]Core
uniqueP9515_00371hypothetical protein (rev) [36830..39763][5925-8909]Accessory
uniqueP9515_14091hypothetical protein (dir) [1248060..1248992][11952-12935]Accessory
uniqueP9515_12551hypothetical protein (rev) [1103179..1103412][16961-17245]Accessory
uniqueP9515_01411hypothetical protein (rev) [133299..133601][21555-21908]Accessory
uniqueP9515_12551hypothetical protein (rev) [1103179..1103412][26571-26855]Accessory

Contact Information

Company Name: University of Pretoria
Website: http://bargene.bi.up.ac.za/
Email: oleg.reva@up.ac.za; repierneef@live.com; talk2adey100@gmail ;
Phone number:+27-12-420-5802